Chromodomain antagonists that target the polycomb-group methyllysine reader protein chromobox homolog 7 (CBX7)

J Med Chem. 2014 Apr 10;57(7):2874-83. doi: 10.1021/jm401487x. Epub 2014 Mar 26.

Abstract

We report here a peptide-driven approach to create first inhibitors of the chromobox homolog 7 (CBX7), a methyllysine reader protein. CBX7 uses its chromodomain to bind histone 3, lysine 27 trimethylated (H3K27me3), and this recognition event is implicated in silencing multiple tumor suppressors. Small trimethyllysine containing peptides were used as the basic scaffold from which potent ligands for disruption of CBX7-H3K27me3 complex were developed. Potency of ligands was determined by fluorescence polarization and/or isothermal titration calorimetry. Binding of one ligand was characterized in detail using 2D NMR and X-ray crystallography, revealing a structural motif unique among human CBX proteins. Inhibitors with a ∼200 nM potency for CBX7 binding and 10-fold/400-fold selectivity over related CBX8/CBX1 proteins were identified. These are the first reported inhibitors of any chromodomain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromobox Protein Homolog 5
  • Chromosomal Proteins, Non-Histone / antagonists & inhibitors
  • Chromosomal Proteins, Non-Histone / metabolism
  • Crystallography, X-Ray
  • Fluorescence Polarization
  • Histones / chemistry*
  • Histones / metabolism
  • Humans
  • Lysine / analogs & derivatives*
  • Lysine / pharmacology
  • Models, Molecular
  • Molecular Structure
  • Peptide Fragments / pharmacology*
  • Polycomb Repressive Complex 1 / antagonists & inhibitors
  • Polycomb Repressive Complex 1 / metabolism*
  • Protein Binding
  • Protein Conformation
  • Protein Structure, Tertiary
  • Structure-Activity Relationship

Substances

  • CBX1 protein, human
  • CBX7 protein, human
  • CBX8 protein, human
  • Chromosomal Proteins, Non-Histone
  • Histones
  • Peptide Fragments
  • Chromobox Protein Homolog 5
  • trimethyllysine
  • Polycomb Repressive Complex 1
  • Lysine

Associated data

  • PDB/4MN3